From: A practical primer for image-based particle measurements in microplastic research
Step | Time estimate per sample | Aspect | Recommendation |
---|---|---|---|
1: Sample preparation | Few hoursa | Subsampling | Take ten subsamples of equal weight from the homogenized bulk |
Minimum number of particles | 300 for environmental microplastics and 10,000 for microplastics that are used in effect studies | ||
Contamination | Clean instruments and sample holders. Use procedural blanks and avoid plastics. Work with a laminar flow box and cover samples | ||
De-agglomeration | Sprinkle a small amount of microplastics through a sieve with a mesh size slightly larger than the largest particle | ||
Measuring points | With effect studies, measure after production, in vivo, and post mortem. For environmental microplastics, measure the filter | ||
2: Image acquisition | 1 h – 1 daya | Calibration | Calibrate the light microscope by measuring a given distance ten times at different locations on a certified graticule |
Magnification | The magnification should be set so that the smallest particle is represented by at least five to ten pixels in a montage | ||
Illumination | Always use Köhler illumination. Choose the type of illumination based on the microplastics in the sample | ||
Depth of focus | Use Z-stacks to maximize the depth of focus | ||
Image storage | 16-bit grey scale images stored as uncompressed.tiff files with all relevant metadata | ||
Number of field of views | Multiply the minimum number of particles by 5 to 50 particles per field of view | ||
3. Digital image processing | Few seconds (computer vision) – 30 min [128] | Smoothing | Cancel noise by filters. Use them very carefully. Correct uneven illumination a digital image of the empty background |
Contrast | Use auto contrast functions in the whole digital image | ||
Segmentation | Choose an adequate computer algorithm for global automatic thresholding by qualitative and quantitative comparisons | ||
Separation of touching particles | Avoid the usage of computer algorithms. Better de-agglomerate the subsamples | ||
4. Measurement | Few seconds (computer vision) [128] – few minutesa | Measurement frames | The choice generally depends on the automation of the stage. Neighboring measurement frames can be processed the easiest |
Particle size measurement | Choose a size metric based on the research objective. As a compromise, report the maximum Feret’s diameter and open data | ||
Particle shape measurement | Calculate roundness, solidity, and elongation and provide open data | ||
Computer algorithms | Measure the perimeter with the Freeman algorithm. Measuring the projection area is done by counting pixels | ||
5. Quality control and quality assurance | 1 – 2 daysa | Outlier detection in subsamples | Apply Grubb’s test/Dixon’s Q to test whether the extreme values of the subsamples are outliers |
Background contamination | Use procedural blanks to estimate the number of non-plastic particles by spectroscopy | ||
Excluding of small microplastics | Remove all microplastics < 3 µm from the data analysis | ||
Validation of particle shape | Use a Sphericity-Elongation diagram to detect microplastics with a combination outside the theoretical range | ||
6. Data reporting | Few hoursa | Test report | Write a test report according to ISO 13322–1:2014 |
Particle size distribution | Draw a normalized histogram with corrected counts. Choose the type of visualization (linear/logarithmic) based on the width of the distribution. Alternatively, report a cumulative distribution | ||
Distributions of shape descriptors | Apply the same recommendations as for particle size distributions. Use a size interval of 0.1 | ||
Summary statistics | Report the median and the (geometric) standard deviation |